More Details on Velvet Roadmaps File Based on Reader's Question


About an year back, we briefly explained the format of Roadmaps file generated by Velvet assembly program. Our explanation was brief and was not very helpful to understand all entries in the Roadmaps file. Reader SRB requested us to provide more details by working on an example.

s1

ACTCGTACTTGTA

s2

GTCCGTAGTCAGTA

kmer=3

In the forum section, we presented several examples including above to explain how Roadmaps is generated. Please let us know, whether they are helpful, either in the comment section of this commentary or in the forum itself.


Written by M. //

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