Biology of Genomes Conference 2013

Biology of Genomes Conference 2013

2013 The Biology of Genomes Starts Today

The above link from nextgenseek blog has nice wordle image of important words.

Twitter hashtag - #bog13

Accepted talks - from nextgenseek blog

  • Andersson, R. Systematic in vivo characterization of active enhancers across the human body

  • Arnold, C. STARR-seq identifies genome-wide quantitative enhancer activity maps

  • Auton, A.J. Genetic recombination is targeted towards gene promoter regions in dogs

  • Ayroles, J.F. Genetic incompatibilities within species are widespread

  • Bachtrog, D. Transposable element mediated rewiring of a regulatory networkDosage compensation in Drosophila miranda

  • Battle, A. Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

  • Blekhman, R. Using deep whole-genome sequencing to understand the role of non-coding genetic variation in complex developmental disease

  • Brown, A. Genetic epistasis in gene expression regulation via variance expression quantitative trait loci in the TwinsUK cohort

  • Brown, J.B. The dynamic and eco-responsive transcriptome of Drosophila melanogaster

  • Bulyk, M. Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos

  • Carpenter, M.L. Pulling out the 1%Whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries

  • Castellano, S. Patterns of coding variation in the complete exomes of three Neandertals

  • De Jong, P.J. The sequencing, assembly, and characterization of a 24Gb conifer genome (P. taeda)

  • Elvers, I. Mapping canine cancersOverlapping and divergent pathways

  • Engreitz, J. Large noncoding RNAs can localize to regulatory DNA targets by exploiting the three-dimensional architecture of the genome

  • Esko, T. Polygenic variation of human height identifies new loci and biological pathways in a large-scale meta analysis of 250,000 individuals

  • Garfield, D. Contrasts between adaptive coding and noncoding changes reveals repeated evolutionary patterns across phyla

  • Garrison, E. Simultaneous assembly of thousands of human genomes

  • Gifford, D.K. Directional and non-directional pioneer transcription factors make way for settler factors

  • Gravel, S. Reconstructing Native American migrations using genome-wide sequence data

  • Jaffe, D.B. Highly accurate determination of indels (and SNPs) from human resequencing data with an assembly-based approach

  • Khurana, E. Interpretation of genomic variants using a unified biological network approach

  • Korbel, J.O. Origin, complexity and impact of DNA structural rearrangements in cancer

  • Kruglyak, L. Genomic approaches to the missing heritability problem in yeast

  • Kundaje, A.B. Comparative analysis of chromatin state dynamics across organisms, cell types and individuals

  • Kyriazopoulou Panagiotopoulou, S. Genome diversity within a human medulloblastoma

  • Lappalainen, T. Transcriptome and genome sequencing uncovers functional variation in human populations

  • MacArthur, D.G. Integrated analysis of protein-coding variation in over 25,000 individuals

  • Marioni, J. A general approach to account for technical noise in single-cell RNA-seq experiments

  • Mortazavi, A. Genomic analysis of SteinernemaInsights into insect parasitism, intragenus and intergenus evolution

  • Nordborg, M. The genotype-phenotype map in Arabidopsis thaliana

  • Pbo, S. A high-coverage Neandertal genome

  • Parker, S.C. Integrative genomic analysis of RNA and ChIP-seq data across multiple cell types identifies “stretch enhancers” associated with type 2 diabetes

  • Parts, L. Quantitative genomics of single cell protein traits

  • Pennacchio, L.A. High throughput enhancer assessment in vivo

  • Pickrell, J.K. Unraveling waves of population mixture in sub-Saharan Africa using patterns of linkage disequilibrium

  • Pipes, L. Changes in RNA-seq profiles of silver foxes (Vulpes vulpes) after 50 generations of selection on tame/aggressive behaviors

  • Ren, B. A comparative and integrated map of functional sequences in the mouse genome

  • salzman, j. Developmentally regulated features of widespread circular RNA expression

  • Shapiro, B. Genomic signatures of intrahost evolution and selection in viral hemorrhagic fevers

  • Siepel, A.C. Genome-scale sampling of ancestral recombination graphs

  • Snyder, M. Adventures in personal medicineIntegrative personal omics profiling for monitoring healthy and disease states

  • Song, Y.S. Distortion of genealogical properties for very large samples

  • Soranzo, N. Whole-genome sequence based association studies of complex traitsThe UK10K project

  • Sudmant, P. Evolution and diversity of copy number variation in the great ape lineage

  • Tischler, V. Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

  • Williams, A. A genome-wide estimate of meiotic gene conversion rate in humans

  • Wilson, R.K. Comprehensive analysis of relapsed acute lymphoblastic leukemia reveals intronic mutations that drive FLT3 over-expression

We forgot to include an important talk -

Salzberg, S.L. The sequencing, assembly, and characterization of a 24Gb conifer genome (P. taeda)

Written by M. //