biopython v1.71.0 Bio.Blast.Applications

Definitions for interacting with BLAST related applications.

Wrappers for the new NCBI BLAST+ tools (written in C++):

  • NcbiblastpCommandline - Protein-Protein BLAST
  • NcbiblastnCommandline - Nucleotide-Nucleotide BLAST
  • NcbiblastxCommandline - Translated Query-Protein Subject BLAST
  • NcbitblastnCommandline - Protein Query-Translated Subject BLAST
  • NcbitblastxCommandline - Translated Query-Protein Subject BLAST
  • NcbipsiblastCommandline - Position-Specific Initiated BLAST
  • NcbirpsblastCommandline - Reverse Position Specific BLAST
  • NcbirpstblastnCommandline - Translated Reverse Position Specific BLAST
  • NcbideltablastCommandline - Protein-Protein domain enhanced lookup time accelerated blast
  • NcbiblastformatterCommandline - Convert ASN.1 to other BLAST output formats

For further details, see:

Camacho et al. BLAST+: architecture and applications BMC Bioinformatics 2009, 10:421 doi:10.1186/1471-2105-10-421

Link to this section Summary


Run the Bio.Blast.Applications module’s doctests

Link to this section Functions

Run the Bio.Blast.Applications module’s doctests.