biopython v1.71.0 Bio.PDB.StructureAlignment.StructureAlignment
Class to align two structures based on an alignment of their sequences.
Link to this section Summary
Test if aa in sequence fits aa in structure
Iterator over all residue pairs
Map residues between the structures
Link to this section Functions
Link to this function __init__()
- fasta_align - Alignment object
- m1, m2 - two models
- si, sj - the sequences in the Alignment object that correspond to the structures
Link to this function _test_equivalence()
Test if aa in sequence fits aa in structure.
Link to this function get_iterator()
Iterator over all residue pairs.
Link to this function get_maps()
Map residues between the structures.
Return two dictionaries that map a residue in one structure to the equivealent residue in the other structure.