biopython v1.71.0 Bio.PDB.StructureAlignment.StructureAlignment
Class to align two structures based on an alignment of their sequences.
Link to this section Summary
Functions
Initialize
Test if aa in sequence fits aa in structure
Iterator over all residue pairs
Map residues between the structures
Link to this section Functions
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__init__()
Initialize.
Attributes:
- fasta_align - Alignment object
- m1, m2 - two models
- si, sj - the sequences in the Alignment object that correspond to the structures
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_test_equivalence()
Test if aa in sequence fits aa in structure.
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get_iterator()
Iterator over all residue pairs.
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get_maps()
Map residues between the structures.
Return two dictionaries that map a residue in one structure to the equivealent residue in the other structure.