biopython v1.71.0 Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness
Calculate a fitness giving weight to schemas that match many times.
This fitness function tries to maximize schemas which are found many times in a group of sequences.
Link to this section Summary
Link to this section Functions
Initialize with sequences to evaluate.
- seq_records — A set of SeqRecord objects which we use to calculate the fitness.
- schema_evaluator - An Schema class which can be used to evaluate find motif matches in sequences.
Calculate the fitness of a genome based on schema matches.
This bases the fitness of a genome completely on the number of times it matches in the set of seq_records. Matching more times gives a better fitness