biopython

v1.71.0

biopython v1.71.0 Bio.KEGG.KGML.KGML_pathway.Graphics

An Entry subelement used to represents the visual representation.

A subelement of Entry, specifying its visual representation, as described in release KGML v0.7.1 (http://www.kegg.jp/kegg/xml/docs/)

Attributes:

  • name Label for the graphics object
  • x X-axis position of the object (int)
  • y Y-axis position of the object (int)
  • coords polyline co-ordinates, list of (int, int) tuples
  • type object shape
  • width object width (int)
  • height object height (int)
  • fgcolor object foreground color (hex RGB)
  • bgcolor object background color (hex RGB)

Some attributes are present only for specific graphics types. For example, line types do not (typically) have a width. We permit non-DTD attributes and attribute settings, such as

dash List of ints, describing an on/off pattern for dashes

Link to this section Summary

Functions

__init__()

Initialize the class

bounds()

Coordinate bounds for the Graphics element

centre()

Return the centre of the Graphics object as an (x, y) tuple

element()

Return the Graphics as a valid KGML element

Link to this section Functions

Link to this function __init__()

Initialize the class.

Link to this function bounds()

Coordinate bounds for the Graphics element.

Return the bounds of the Graphics object as an [(xmin, ymin), (xmax, ymax)] tuple. Co-ordinates give the centre of the circle, rectangle, roundrectangle elements, so we have to adjust for the relevant width/height.

Link to this function centre()

Return the centre of the Graphics object as an (x, y) tuple.

Link to this function element()

Return the Graphics as a valid KGML element.