biopython

v1.71.0

biopython v1.71.0 Bio.SeqIO.SeqXmlIO.SeqXmlIterator

Breaks seqXML file into SeqRecords.

Assumes valid seqXML please validate beforehand.

Link to this section Summary

Functions

__init__()

Create the object

_attr_DBRef()

Parse a database cross reference

_attr_entry()

New entry set id and the optional entry source

_attr_property()

Parse key value pair properties and store them as annotations

_attr_seqXML()

Parse the document metadata

_attr_species()

Parse the species information

_elem_AAseq()

Parse protein sequence

_elem_DNAseq()

Parse DNA sequence

_elem_RNAseq()

Parse RNA sequence

_elem_description()

Parse the description

Link to this section Functions

Link to this function __init__()

Create the object.

Link to this function _attr_DBRef()

Parse a database cross reference

Link to this function _attr_entry()

New entry set id and the optional entry source.

Link to this function _attr_property()

Parse key value pair properties and store them as annotations.

Link to this function _attr_seqXML()

Parse the document metadata.

Link to this function _attr_species()

Parse the species information.

Link to this function _elem_AAseq()

Parse protein sequence.

Link to this function _elem_DNAseq()

Parse DNA sequence.

Link to this function _elem_RNAseq()

Parse RNA sequence.

Link to this function _elem_description()

Parse the description.