biopython v1.71.0 Bio.NeuralNetwork.Gene.Schema.SchemaFinder
Find schema in a set of sequences using a genetic algorithm approach.
Finding good schemas is very difficult because it takes forever to enumerate all of the potential schemas. This finder using a genetic algorithm approach to evolve good schema which match many times in a set of sequences.
The default implementation of the finder is ready to find schemas in a set of DNA sequences, but the finder can be customized to deal with any type of data.
Link to this section Summary
Link to this section Functions
Initialize the Schema Finder with its parameters.
- num_schemas — the number of useful (positive fitness) schemas we want to generate.
Find well-represented schemas in the given set of SeqRecords.
Find schemas which differentiate between the two sets of SeqRecords.