biopython

v1.71.0

biopython v1.71.0 Bio.Phylo.NeXMLIO

I/O function wrappers for the NeXML file format.

See: http://www.nexml.org

Link to this section Summary

Functions

cdao_to_obo()

Optionally converts a CDAO-prefixed URI into an OBO-prefixed URI

matches()

Check for matches in both CDAO and OBO namespaces

parse()

Iterate over the trees in a NeXML file handle

qUri()

Given a prefixed URI, return the full URI

write()

Write a trees in NeXML format to the given file handle

Link to this section Functions

Link to this function cdao_to_obo()

Optionally converts a CDAO-prefixed URI into an OBO-prefixed URI.

Link to this function matches()

Check for matches in both CDAO and OBO namespaces.

Link to this function parse()

Iterate over the trees in a NeXML file handle.

:returns: generator of Bio.Phylo.NeXML.Tree objects.

Link to this function qUri()

Given a prefixed URI, return the full URI.

Link to this function write()

Write a trees in NeXML format to the given file handle.

:returns: number of trees written.