biopython

v1.71.0

biopython v1.71.0 Bio.PDB.Entity.DisorderedEntityWrapper

Wrapper class to group equivalent Entities.

This class is a simple wrapper class that groups a number of equivalent Entities and forwards all method calls to one of them (the currently selected object). DisorderedResidue and DisorderedAtom are subclasses of this class.

E.g.: A DisorderedAtom object contains a number of Atom objects, where each Atom object represents a specific position of a disordered atom in the structure.

Link to this section Summary

Functions

__contains__()

True if the child has the given id

__getattr__()

Forward the method call to the selected child

__getitem__()

Return the child with the given id

__init__()

Initialize the class

__iter__()

Return the number of children

__len__()

Return the number of children

__setitem__()

Add a child, associated with a certain id

__sub__()

Subtraction with another object

detach_parent()

Detach the parent

disordered_add()

Add disordered entry

disordered_get()

Get the child object associated with id

disordered_get_id_list()

Return a list of id’s

disordered_get_list()

Return list of children

disordered_has_id()

True if there is an object present associated with this id

disordered_select()

Select the object with given id as the currently active object

get_id()

Return the id

get_parent()

Return parent

is_disordered()

Return 2, indicating that this Entity is a collection of Entities

set_parent()

Set the parent for the object and its children

Link to this section Functions

Link to this function __contains__()

True if the child has the given id.

Link to this function __getattr__()

Forward the method call to the selected child.

Link to this function __getitem__()

Return the child with the given id.

Link to this function __init__()

Initialize the class.

Link to this function __iter__()

Return the number of children.

Link to this function __len__()

Return the number of children.

Link to this function __setitem__()

Add a child, associated with a certain id.

Link to this function __sub__()

Subtraction with another object.

Link to this function detach_parent()

Detach the parent.

Link to this function disordered_add()

Add disordered entry.

This is implemented by DisorderedAtom and DisorderedResidue.

Link to this function disordered_get()

Get the child object associated with id.

If id is None, the currently selected child is returned.

Link to this function disordered_get_id_list()

Return a list of id’s.

Link to this function disordered_get_list()

Return list of children.

Link to this function disordered_has_id()

True if there is an object present associated with this id.

Link to this function disordered_select()

Select the object with given id as the currently active object.

Uncaught method calls are forwarded to the selected child object.

Link to this function get_id()

Return the id.

Link to this function get_parent()

Return parent.

Link to this function is_disordered()

Return 2, indicating that this Entity is a collection of Entities.

Link to this function set_parent()

Set the parent for the object and its children.