biopython v1.71.0 Bio.GenBank.Scanner.EmblScanner
For extracting chunks of information in EMBL files.
Link to this section Summary
Functions
The tokens represent
The tokens represent
The tokens represent
Return a tuple containing a list of any misc strings, and the sequence
Link to this section Functions
Link to this function
_feed_first_line_new()
The tokens represent:
- Primary accession number
- Sequence version number
- Topology: ‘circular’ or ‘linear’
- Molecule type (e.g. ‘genomic DNA’)
- Data class (e.g. ‘STD’)
- Taxonomic division (e.g. ‘PRO’)
- Sequence length (e.g. ‘4639675 BP.’)
Link to this function
_feed_first_line_old()
The tokens represent:
- Primary accession number (space sep)
- ??? (e.g. standard) (semi-colon)
- Topology and/or Molecule type (e.g. ‘circular DNA’ or ‘DNA’)
- Taxonomic division (e.g. ‘PRO’)
- Sequence length (e.g. ‘4639675 BP.’)
Link to this function
_feed_first_line_patents_kipo()
The tokens represent:
- Primary accession number (space sep)
- ??? (e.g. standard) (semi-colon)
- Molecule type (protein)? Division? Always ‘PRT’
- Sequence length (e.g. ‘111 AA.’)