biopython

v1.71.0

biopython v1.71.0 Bio.GenBank.Scanner.EmblScanner

For extracting chunks of information in EMBL files.

Link to this section Summary

Functions

_feed_first_line_new()

The tokens represent

_feed_first_line_old()

The tokens represent

_feed_first_line_patents_kipo()

The tokens represent

parse_footer()

Return a tuple containing a list of any misc strings, and the sequence

Link to this section Functions

Link to this function _feed_first_line_new()

The tokens represent:

  1. Primary accession number
  2. Sequence version number
  3. Topology: ‘circular’ or ‘linear’
  4. Molecule type (e.g. ‘genomic DNA’)
  5. Data class (e.g. ‘STD’)
  6. Taxonomic division (e.g. ‘PRO’)
  7. Sequence length (e.g. ‘4639675 BP.’)
Link to this function _feed_first_line_old()

The tokens represent:

  1. Primary accession number (space sep)
  2. ??? (e.g. standard) (semi-colon)
  3. Topology and/or Molecule type (e.g. ‘circular DNA’ or ‘DNA’)
  4. Taxonomic division (e.g. ‘PRO’)
  5. Sequence length (e.g. ‘4639675 BP.’)
Link to this function _feed_first_line_patents_kipo()

The tokens represent:

  1. Primary accession number (space sep)
  2. ??? (e.g. standard) (semi-colon)
  3. Molecule type (protein)? Division? Always ‘PRT’
  4. Sequence length (e.g. ‘111 AA.’)
Link to this function parse_footer()

Return a tuple containing a list of any misc strings, and the sequence.