biopython v1.71.0 Bio.NeuralNetwork.Gene.Pattern.PatternIO
Allow reading and writing of patterns to files.
This just defines a simple persistence class for patterns, making it easy to write them to a file and read ‘em back.
Link to this section Summary
Link to this section Functions
Intialize the reader and writer class.
- alphabet - An optional argument specifying the alphabet which patterns should follow. If an alphabet is set it’ll be used to verify that all patterns follow it.
- separator - A character to use in separating items in a signature when it is written to a file and read back. This character should not be in the possible alphabet of the sequences, or there will be trouble.
Read patterns from the specified handle.
Write a list of patterns to the given handle.
Convenience function to write Seq objects to a file.
This can take Seqs and MutableSeqs, and write them to a file as strings.