biopython v1.71.0 Bio.KEGG.KGML.KGML_parser
Classes and functions to parse a KGML pathway map.
The KGML pathway map is parsed into the object structure defined in KGML_Pathway.py in this module.
Classes:
- KGMLParser - Parses KGML file
Functions:
- read - Returns a single Pathway object, using KGMLParser internally
Link to this section Summary
Link to this section Functions
Link to this function
parse()
Return an iterator over Pathway elements.
Arguments:
- handle - file handle to a KGML file for parsing
- debug - integer for amount of debug information to print
This is a generator for the return of multiple Pathway objects.
Link to this function
read()
Parse a single KEGG Pathway from given file handle.
Returns a single Pathway object. There should be one and only one pathway in each file, but there may well be pathological examples out there.