biopython

v1.71.0

biopython v1.71.0 Bio.FSSP.FSSPTools

Several routines used to extract information from FSSP sections.

filter: filters a passed summary section and alignment section according to a numeric

    attribute in the summary section. Returns new summary and alignment sections

For example, to filter in only those records which have a zscore greater than 4.0 and lesser than 7.5:

new_sum, new_align = filter(sum, align, ‘zscore’, 4, 7.5)

Link to this section Summary

Functions

filter()

Filters a passed summary section and alignment section according to a numeric attribute in the summary section. Returns new summary and alignment sections

mult_align()

Returns a biopython multiple alignment instance (MultipleSeqAlignment)

name_filter()

Accepts a list of names. Returns a new Summary block and Alignment block which contain the info only for those names passed

Link to this section Functions

Link to this function filter()

Filters a passed summary section and alignment section according to a numeric attribute in the summary section. Returns new summary and alignment sections.

Link to this function mult_align()

Returns a biopython multiple alignment instance (MultipleSeqAlignment)

Link to this function name_filter()

Accepts a list of names. Returns a new Summary block and Alignment block which contain the info only for those names passed.