biopython

v1.71.0

biopython v1.71.0 Bio.SeqIO.SeqXmlIO.SeqXmlWriter

Writes SeqRecords into seqXML file.

SeqXML requires the sequence alphabet be explicitly RNA, DNA or protein, i.e. an instance or subclass of Bio.Alphapet.RNAAlphabet, Bio.Alphapet.DNAAlphabet or Bio.Alphapet.ProteinAlphabet.

Link to this section Summary

Functions

__init__()

Create Object and start the xml generator

_write_dbxrefs()

Write all database cross references

_write_description()

Write the description if given

_write_properties()

Write all annotations that are key value pairs with values of a primitive type or list of primitive types

_write_seq()

Write the sequence

_write_species()

Write the species if given

write_footer()

Close the root node and finish the XML document

write_header()

Write root node with document metadata

write_record()

Write one record

Link to this section Functions

Link to this function __init__()

Create Object and start the xml generator.

Link to this function _write_dbxrefs()

Write all database cross references.

Link to this function _write_description()

Write the description if given.

Link to this function _write_properties()

Write all annotations that are key value pairs with values of a primitive type or list of primitive types.

Link to this function _write_seq()

Write the sequence.

Note that SeqXML requires a DNA, RNA or protein alphabet.

Link to this function _write_species()

Write the species if given.

Link to this function write_footer()

Close the root node and finish the XML document.

Link to this function write_header()

Write root node with document metadata.

Link to this function write_record()

Write one record.