biopython

v1.71.0

biopython v1.71.0 Bio.Blast.Record.MultipleAlignment

Holds information about a multiple alignment.

Members: alignment A list of tuples (name, start residue, sequence, end residue).

The start residue is 1-based. It may be blank, if that sequence is not aligned in the multiple alignment.

Link to this section Summary

Functions

__init__()

Initialize the class

to_generic()

Retrieve generic alignment object for the given alignment

Link to this section Functions

Link to this function __init__()

Initialize the class.

Link to this function to_generic()

Retrieve generic alignment object for the given alignment.

Instead of the tuples, this returns a MultipleSeqAlignment object from Bio.Align, through which you can manipulate and query the object.

alphabet is the specified alphabet for the sequences in the code (for example IUPAC.IUPACProtein).

Thanks to James Casbon for the code.