biopython v1.71.0 Bio.PDB.FragmentMapper.FragmentMapper

Map polypeptides in a model to lists of representative fragments.

Link to this section Summary

True if the given residue is in any of the mapped fragments

Get an entry

Create instance of FragmentMapper

_map()

Map (PRIVATE)

Is this residue present? (DEPRECATED)

__contains__()

True if the given residue is in any of the mapped fragments.

:type res: L{Residue}

__getitem__()

Get an entry.

:type res: L{Residue}

:return: fragment classification :rtype: L{Fragment}

__init__()

Create instance of FragmentMapper

:param model: the model that will be mapped :type model: L{Model}

:param lsize: number of fragments in the library :type lsize: int

:param flength: length of fragments in the library :type flength: int

:param fdir: directory where the definition files are

         found (default=".")

:type fdir: string

_map()

Map (PRIVATE).

:param model: the model that will be mapped :type model: L{Model}

has_key()

Is this residue present? (DEPRECATED).

:type res: L{Residue}