biopython v1.71.0 Bio.NeuralNetwork.Gene.Motif.MotifCoder
Convert motifs and a sequence into neural network representations.
This is designed to convert a sequence into a representation that can be fed as an input into a neural network. It does this by representing a sequence based the motifs present.
Link to this section Summary
Link to this section Functions
Initialize an input producer with motifs to look for.
- motifs - A complete list of motifs, in order, that are to be searched for in a sequence.
Represent a sequence as a set of motifs.
- sequence - A Bio.Seq object to represent as a motif.
This converts a sequence into a representation based on the motifs. The representation is returned as a list of the relative amount of each motif (number of times a motif occurred divided by the total number of motifs in the sequence). The values in the list correspond to the input order of the motifs specified in the initializer.