biopython v1.71.0 Bio.Graphics.BasicChromosome.Organism
Top level class for drawing chromosomes.
This class holds information about an organism and all of it’s chromosomes, and provides the top level object which could be used for drawing a chromosome representation of an organism.
Chromosomes should be added and removed from the Organism via the add and remove functions.
Link to this section Summary
Functions
Initialize
Draw a legend for the figure
Write out the title of the organism figure
Draw out the information for the Organism
Link to this section Functions
Link to this function
__init__()
Initialize.
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_draw_legend()
Draw a legend for the figure.
Subclasses should implement this (see also self._legend_height) to provide specialized legends.
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_draw_title()
Write out the title of the organism figure.
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draw()
Draw out the information for the Organism.
Arguments:
- output_file — The name of a file specifying where the document should be saved, or a handle to be written to. The output format is set when creating the Organism object. Alternatively, output_file=None will return the drawing using the low-level ReportLab objects (for further processing, such as adding additional graphics, before writing).
- title — The output title of the produced document.