biopython v1.71.0 Bio.GA.Organism
Deal with an Organism in a Genetic Algorithm population.
Link to this section Summary
Functions
Generate a population given a function to create genomes
Generate a population of individuals with randomly set genomes
Link to this section Functions
Link to this function
function_population()
Generate a population given a function to create genomes.
Arguments:
- new_genome - A function or callable object that will return a genome that can be used for a new organism. This new genome should be a MutableSeq object with a specified alphabet.
- num_organisms - The number of individuals we want in the population.
- fitness_calculator — A function that will calculate the fitness of the organism when given the organisms genome.
Link to this function
random_population()
Generate a population of individuals with randomly set genomes.
Arguments:
- genome_alphabet — An Alphabet object describing all of the possible letters that could potentially be in the genome of an organism.
- genome_size — The size of each organisms genome.
- num_organism — The number of organisms we want in the population.
- fitness_calculator — A function that will calculate the fitness of the organism when given the organisms genome.