biopython v1.71.0 Bio.PDB.PSEA
Wrappers for PSEA, a program for secondary structure assignment.
See this citation for P-SEA, PMID: 9183534
Labesse G, Colloc’h N, Pothier J, Mornon J-P: P-SEA: a new efficient assignment of secondary structure from C_alpha. Comput Appl Biosci 1997 , 13:291-295
Link to this section Summary
Apply seconardary structure information to residues in model
Parse PSEA output file
Translate PSEA secondary structure string into HEC
Run PSEA and return output filename
Link to this section Functions
Apply seconardary structure information to residues in model.
Parse PSEA output file.
Translate PSEA secondary structure string into HEC.
Run PSEA and return output filename.
Note that this assumes the P-SEA binary is called “psea” and that it is on the path.
Note that P-SEA will write an output file in the current directory using the input filename with extension “.sea”.
Note that P-SEA will write output to the terminal while run.