biopython

v1.71.0

biopython v1.71.0 Bio.Phylo.CDAOIO

I/O function wrappers for the RDF/CDAO file format.

This is an RDF format that conforms to the Comparative Data Analysis Ontology (CDAO). See: http://www.evolutionaryontology.org/cdao

This module requires the librdf Python bindings (http://www.librdf.org)

The CDAOIO.Parser, in addition to parsing text files, can also parse directly from a triple store that implements the Redland storage interface; similarly, the CDAOIO.Writer can store triples in a triple store instead of serializing them to a file.

Link to this section Summary

Functions

format_label()

Format label for librdf

parse()

Iterate over the trees in a CDAO file handle

qUri()

Resolve URI for librdf

write()

Write a trees in CDAO format to the given file handle

Link to this section Functions

Link to this function format_label()

Format label for librdf.

Link to this function parse()

Iterate over the trees in a CDAO file handle.

:returns: generator of Bio.Phylo.CDAO.Tree objects.

Link to this function qUri()

Resolve URI for librdf.

Link to this function write()

Write a trees in CDAO format to the given file handle.

:returns: number of trees written.